YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15804728, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	166	0.99
Transmembrane Helix	167	190	0.92
Cytoplasmic	191	208	0.84
Transmembrane Helix	209	233	0.87
Non-Cytoplasmic	234	243	0.84
Transmembrane Helix	244	267	0.91
Cytoplasmic	268	287	0.90
Transmembrane Helix	288	312	0.90
Non-Cytoplasmic	313	327	0.81
Transmembrane Helix	328	348	0.92
Cytoplasmic	349	360	0.81
Transmembrane Helix	361	381	0.87
Non-Cytoplasmic	382	386	0.75
Transmembrane Helix	387	406	0.91
Cytoplasmic	407	414	0.79
Transmembrane Helix	415	436	0.48
Non-Cytoplasmic	437	565	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRIFTLIL LLCSTSVFAG LFDAPGRSQF VPVDQAFAFD FQQNQHDLNL TWQIKDGYYL  60
   61 YRKQIRITPE HAKIADVQLP QGVWHEDEFY GKSEIYRDRL TLPVTINQAS AGATLTVTYQ 120
  121 GCADAGFCYP PETKTVPLSE VVANNAASQP VSVPQQEQPT AQLPFSALWA LLIGIGIAFT 180
  181 PCVLPMYPLI SGIVLGGKQR LSTARALLLT FIYVQGMALT YTALGLVVAA AGLQFQAALQ 240
  241 HPYVLIGLTI VFTLLAMSMF GLLTLQLPSS LQTRLTLMSN RQQGGSPGGV FIMGTIAGLI 300
  301 CSPCTTAPLS AILLYIAQSG NMWLGGGTLY LYALGMGLPL MLITVFGNRL LPKSGPWMEQ 360
  361 VKTAFGFVIL ALPVFLLERV IGDVWGLRLW SALGVAFFGW AFITSLQAKR GWMRVVQIIL 420
  421 LAAALVSVRP LQDWAFGATH TAQTQTHLNF TQIKTVDELN QALVEAKGKP VMLDLYADWC 480
  481 VACKEFEKYT FSDPQVQKAL ADTVLLQANV TANDAQDVAL LKHLNVLGLP TILFFDGQGQ 540
  541 EHPQARVTGF MDAETFSAHL RDRQP