YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSBD_CAMJR
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.97
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	173	0.96
Transmembrane Helix	174	198	0.84
Cytoplasmic	199	211	0.89
Transmembrane Helix	212	236	0.87
Non-Cytoplasmic	237	247	0.80
Transmembrane Helix	248	268	0.97
Cytoplasmic	269	288	0.92
Transmembrane Helix	289	313	0.93
Non-Cytoplasmic	314	330	0.72
Transmembrane Helix	331	353	0.91
Cytoplasmic	354	361	0.91
Transmembrane Helix	362	382	0.89
Non-Cytoplasmic	383	386	0.90
Transmembrane Helix	387	405	0.96
Cytoplasmic	406	418	0.79
Transmembrane Helix	419	438	0.96
Non-Cytoplasmic	439	567	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFGIILLS FCLCFASILS LNEAFNVKSN SYNNSISIDI ELGKDIYLYS NKLKLYINEK  60
   61 DISSLINLPQ SSTRGNENVY YQKLNLALPN LLLERFAKNT TNLIKLEFQG CSEQGLCYNP 120
  121 QTWYFDLISK KDAFEISKPY KAQKTDKKTK IESEESSIAN FLATDNFFWI LLSFFGYGLL 180
  181 LSLTPCILPM IPILSSLIVA KSNAKFSKKY SFFLSFIYVF FMSLAYAIAG VIASFLGASI 240
  241 QGILQKPIIL ILFALIFIAF AFAMFGAFRF ELPLRFQTFI HKKSEKGKGV VGIAIMGFLS 300
  301 ALIVGPCVAA PLAGALIYIA NTGNALLGGS ALFIMSFGMG IPLLFIGLGL GFIKPGFWME 360
  361 KVKIFFGFVM LAMAIWILSR IIEENYILIA YGILGVFFSV FMGIFEKSFT IISKIKKSIL 420
  421 ILILAYSLSI FLGGLFGAKN FLNPLNFNTI SASKHALSYD YINNFEQLKQ EIQTNTKPIM 480
  481 LDFTASWCEN CKLLDELTFS DERIIQKMQN YKLIKVDVSE NNNEQIKTMK EFNVFGPPVL 540
  541 IFFENGKEKL KITGFISADD LLKKIEP