YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DPPC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVTENKVI SAPVPMTPLQ EFWHYFKRNK GAVVGLVYVV IVLFIAIFAN WIAPYNPAEQ  60
   61 FRDALLAPPA WQEGGSMAHL LGTDDVGRDV LSRLMYGARL SLLVGCLVVV LSLIMGVILG 120
  121 LIAGYFGGLV DNIIMRVVDI MLALPSLLLA LVLVAIFGPS IGNAALALTF VALPHYVRLT 180
  181 RAAVLVEVNR DYVTASRVAG AGAMRQMFIN IFPNCLAPLI VQASLGFSNA ILDMAALGFL 240
  241 GMGAQPPTPE WGTMLSDVLQ FAQSAWWVVT FPGLAILLTV LAFNLMGDGL RDALDPKLKQ 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	31	0.64
Transmembrane Helix	32	53	0.93
Non-Cytoplasmic	54	68	0.55
Transmembrane Helix	69	83	0.29
Cytoplasmic	84	99	0.59
Transmembrane Helix	100	126	0.87
Non-Cytoplasmic	127	139	0.61
Transmembrane Helix	140	173	0.75
Cytoplasmic	174	210	0.79
Transmembrane Helix	211	237	0.72
Non-Cytoplasmic	238	263	0.80
Transmembrane Helix	264	287	0.88
Cytoplasmic	288	300	0.92