YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11277274, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTEHAKPLM TPEPNSPPPE DQYTAVSPWR EAFKQLKKNK LAIVGLIIIT SFILIAIFAP  60
   61 LLTSSSYAET NPSNRLQGPS AEHWFGTDDF GRDIFTRIVY GARLSLQVGF FAVTGALIFG 120
  121 TTLGLIAGYY GRWIDMLISR IFDIMLAFPS ILLAIAIVAI LGPSLQNALI AIAIVNVPIF 180
  181 GRLVRSKVIS LREEEFIMAA KAQGMKNGRI IFHHILPNSL APIIVQATLG FGTAILEAAA 240
  241 LGFLGLGAQA PMPEWGKMLS DSRQFIQSAP WTVLFPGFSI MLVVLGFNMI GDGLRDALDP 300
  301 KMKS

Type	Start	End	Confidence
Cytoplasmic	1	40	0.98
Transmembrane Helix	41	62	0.93
Non-Cytoplasmic	63	107	0.96
Transmembrane Helix	108	130	0.92
Cytoplasmic	131	140	0.81
Transmembrane Helix	141	161	0.93
Non-Cytoplasmic	162	167	0.74
Transmembrane Helix	168	186	0.88
Cytoplasmic	187	222	0.78
Transmembrane Helix	223	248	0.78
Non-Cytoplasmic	249	268	0.71
Transmembrane Helix	269	291	0.88
Cytoplasmic	292	304	0.70