YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75210089, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFILRRLG LVIPTFIGIT LLTFAFVHMI PGDPVMIMAG ERGISPERHA QLLAELGLDK  60
   61 PMWQQYLHYI WGVMHGDLGI SMKSRIPVWE EFVPRFQATL ELGVCAMIFA TAVGIPVGVL 120
  121 AAVKRGSIFD HTAVGLALTG YSMPIFWWGM MLIMLVSVHW NLTPVSGRVS DMVFLDDSNP 180
  181 LTGFMLIDTA IWGEDGNFID AVAHMILPAI VLGTIPLAVI VRMTRSSMLE VLGEDYIRTA 240
  241 RAKGLTRMRV IIVHALRNAM LPVVTVIGLQ VGTLLAGAIL TETIFSWPGL GRWLIDALQR 300
  301 RDYPVVQGGV LLVATMIILV NLLVDLLYGV VNPRIRHKK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	98	0.84
Transmembrane Helix	99	123	0.87
Cytoplasmic	124	133	0.59
Transmembrane Helix	134	160	0.73
Non-Cytoplasmic	161	200	0.74
Transmembrane Helix	201	221	0.94
Cytoplasmic	222	257	0.94
Transmembrane Helix	258	281	0.87
Non-Cytoplasmic	282	307	0.86
Transmembrane Helix	308	331	0.87
Cytoplasmic	332	339	0.93