YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DPPB_BACPF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAYAMRRLL LLIPVLIGMT IVTFSIIHLI PGNPAQTILG EQASPQAIAD LEERLGLNEP  60
   61 YWVQYGLYMK DLATGDLGTS LRTNKPIMEE IWPYLAATIE LTIFAMIFAI IIGVNAGIVS 120
  121 AWKQNSWFDY LSMFIALVGV SMPIFWLALM EQWIFAQELG WLPAFGRDNP RDPIISTTGL 180
  181 YVFDTIISGQ FDKTWESIKH LILPGIALGT IPMAIIARMT RSSMLEVLRS DYIRTVNAKG 240
  241 SGQGVVIYKH ALKNALIPVL TVVGLQTGNL LGGAILTETI FSWPGIGRYI FEAINYRDYP 300
  301 VIQSGILVVA TIFVLINLFV DLLYSYIDPR IKY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.97
Transmembrane Helix	9	30	0.95
Non-Cytoplasmic	31	95	0.98
Transmembrane Helix	96	119	0.87
Cytoplasmic	120	129	0.76
Transmembrane Helix	130	150	0.92
Non-Cytoplasmic	151	199	0.93
Transmembrane Helix	200	220	0.91
Cytoplasmic	221	255	0.96
Transmembrane Helix	256	277	0.86
Non-Cytoplasmic	278	300	0.83
Transmembrane Helix	301	324	0.87
Cytoplasmic	325	333	0.85