YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCMB3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPFSIPVQI TLQGGRRRQG RTALPASGIS NGDPLKVHPK LPSSAGEDRA TLLGIAMMAS  60
   61 SVLMFFLLGT TVLKPFMLSS PREESNCTTV HTHIADDWLD FAFTCEGSCQ GQGTYPCLQV 120
  121 FVNLSHSGQK VLLHYDEEAI RTNPKCFYTP KCHGDRDHLL NSALDIKEFF DHNNGTFPCF 180
  181 YSPDGPLGVV LRKSGHKVVF HCLFWPLLTL LGGALIVGLV RLTQHLSFQC EKYRAVVRA

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.68
Transmembrane Helix	50	73	0.88
Cytoplasmic	74	197	0.72
Transmembrane Helix	198	220	0.84
Non-Cytoplasmic	221	239	0.73