YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DNAJ_GEOSE
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRDYYEIL GVSKNATKEE IKKAYRKLSK KYHPDVNKEP DAAEKFKEIK EAYEVLSDDQ  60
   61 KRAHYDQFGQ ADPNQGFGGF RSDDFDLGGF SGFGGFEDIF NTFFGGGRRR NPNAPRAGAD 120
  121 LQYTMTLTFE EAAFGKETDI EIPSEETCNT CHGTGAKPGT KPETCPHCHG AGQISTEQST 180
  181 PFGRIVNRRT CPYCGGTGQY IKEKCTTCGG TGRVKRRKKI HVKIPAGIDD GQQLRVAGQG 240
  241 ERGLTVGRRE IYILSFMWSR MSFLNVTAMI FIAKCRLRLR KLRLGMKSKS RPFTGKLKLK 300
  301 IPAGTQTGTR LRLKGKGVPN VRGYGYGDQH VIVRVVTPTK LTEKQKQLLR EFDQLGGSSM 360
  361 HHEPHDRFFD KVKKAFKPES

Type	Start	End	Confidence
Non-Cytoplasmic	1	255	0.93
Transmembrane Helix	256	277	0.69
Cytoplasmic	278	380	0.72