YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DMSC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGWHEWPL MIFTVFGQCV AGGFIVLALA LLKGDLRAEA QQRVIACMFG LWVLMGIGFI  60
   61 ASMLHLGSPM RAFNSLNRVG ASALSNEIAS GSIFFAVGGI GWLLAMLKKL SPALRTLWLI 120
  121 VTMVLGVIFV WMMVRVYNSI DTVPTWYSIW TPMGFFLTMF MGGPLLGYLL LSLAGVDGWA 180
  181 MRLLPAISVL ALVVSGVVSV MQGAELATIH SSVQQAAALV PDYGALMSWR IVLLAVALCL 240
  241 WIAPQLKGYQ PAVPLLSVSF ILLLAGELIG RGVFYGLHMT VGMAVAS

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.92
Transmembrane Helix	10	32	0.92
Cytoplasmic	33	43	0.91
Transmembrane Helix	44	66	0.91
Non-Cytoplasmic	67	87	0.83
Transmembrane Helix	88	106	0.95
Cytoplasmic	107	115	0.83
Transmembrane Helix	116	134	0.96
Non-Cytoplasmic	135	152	0.79
Transmembrane Helix	153	172	0.93
Cytoplasmic	173	182	0.73
Transmembrane Helix	183	204	0.89
Non-Cytoplasmic	205	224	0.86
Transmembrane Helix	225	244	0.92
Cytoplasmic	245	252	0.84
Transmembrane Helix	253	275	0.88
Non-Cytoplasmic	276	287	0.90