YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHSD_ASHGO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGIKMASPV IRAACKRSLH QSAVRAITIP FLPTLPQNPG GVKGDVNEAN PVPPANKMHG  60
   61 SLHWNIERAF AVAAVPLVGL PLVAGSGVST LMDSLLASVM LGHCYIGFQA CIIDYIPQRV 120
  121 YGKFHQYAMY LLAFGSLLSG VGIYKMESEG YGICGAVAAV WSGKAAREEK A

Type	Start	End	Confidence
Cytoplasmic	1	67	0.90
Transmembrane Helix	68	88	0.88
Non-Cytoplasmic	89	94	0.64
Transmembrane Helix	95	116	0.76
Cytoplasmic	117	125	0.65
Transmembrane Helix	126	144	0.87
Non-Cytoplasmic	145	171	0.50