YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHSD_ASCSU
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAVRRAIP LSARILRTSL IQRCAGATSA AVTGAAPPQF DPIAAEKGFK PLHSHGTLFK  60
   61 IERYFAAAMV PLIPAAYFIH GREMDLCLAL ALTLHVHWGV WGVVNDYGRP FVLGDTLAAA 120
  121 VRVGAYIFTA CLLAGLLYFN EHDVGLTRAF EMVWEL

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	40	0.68
Non-Cytoplasmic	41	60	0.77
Transmembrane Helix	61	79	0.78
Cytoplasmic	80	85	0.64
Transmembrane Helix	86	104	0.79
Non-Cytoplasmic	105	117	0.73
Transmembrane Helix	118	139	0.89
Cytoplasmic	140	156	0.77