YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156914841
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SACARSGLRF GRGVPTTSER HQFGIYLFSY YFIYCLIGRF VMLAPVRAVS TESRRCPLLT  60
   61 VQPCRGLMDE KFQVVIKNLL PNQEVTLHSL HQSEDKDFWE AFGHYISNEH GTVTVAKDGS 120
  121 LGGTYEGTEQ MGLLWSLRPV PGSRPALRLR KMNVLTPMVI NISVYNGHLS QGFSQASLLA 180
  181 TAVTERWYMA PGVKRVNIKE KGVLGTLFLP PGSGPYPGVL DLWGGGGGLI EYRSALLASH 240
  241 GFASLALEYL SPEKLKMTEV DGTYFEKAYQ ILQNHPLVQK DKMAVLGLCF GSAITLTMTA 300
  301 YSRVIKPQCC VCISGSHAIP VDKCLFEVFE DIKKLNGKIQ VNEDNHLIHR NTILPIPSDP 360
  361 ALKVDVGRIK CPLLLVNGTD DQNWATVESA EDMEMMMKKA GNRHLLTVLT YPDAGHLIEP 420
  421 PYTPHFRATN FLLHKMNEKV VMLWGGQTKP HAYAQEDSWE KILAFFREHL YGSNVKAKL

Type	Start	End	Confidence
Cytoplasmic	1	22	0.58
Transmembrane Helix	23	43	0.70
Non-Cytoplasmic	44	479	0.84