YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dga1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEETSIPGI IASTPPISKD SRRNVSHWLQ ALAVFLHSVS LTLTASWYTV LWAFLPFWPF  60
   61 LIVYLIWLIY DDGFVTGKDR QKRWLRNAPP YRWFCHYFPI RLHKTTELDS EKNYIFGYHP 120
  121 HGIISLGAFG GFASEGADFS KLFPGINVSV LTLNSNFYVP VYRDYLMALN INSVSKKSCV 180
  181 SILSRKPGDS VLIVIGGAQE SLLSRPGQNN LVLKKRFGFV KLAFLTGSSL VPCFAFGESD 240
  241 IFEQVDNNPR TRIYKFQEIV KKIAGFTVPF FYGRGLLNKT FGLMPWRKPI NIVVGEPIDV 300
  301 PKKSHPTNQE IYEVHEEYIR RLEGLWNKYK DVFLPNRISE LKLSA

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	48	0.87
Non-Cytoplasmic	49	54	0.64
Transmembrane Helix	55	75	0.87
Cytoplasmic	76	216	0.84
Transmembrane Helix	217	237	0.49
Non-Cytoplasmic	238	345	0.60