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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DEXT_STRDO
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRMLSFPS MLFLLAFGIV LSVSAGTTHA DELANQTAKV ADEASIVVST SQAAVEQTQS  60
   61 QEKEISPAME EDTSNLSLKP NAQQESQSPD SSTELQDPAE QTPPETSDAS APATTSADSV 120
  121 EKYAQDATQN QSSTSNGPGV IRATSAQVTA TRSVVSSQSG DAIVDLSADK ASYRQGEDVN 180
  181 LSVDFKNTTD KEQDVTVYAD VYYIDNKLGT YKFSKHLKAG EGYKMQSGDL KIPASQFENN 240
  241 HGYLLKVRVR DADNNTLSEV NKAIAVESDW TKFPRYGIVG GSQDTNNSLL SKDADRYRAE 300
  301 IEKMKNMNIN SYFFYDVYKT ATNPFPSDEA TFKQDWNTWS GSEIDTQAVK DIVNQVHDGG 360
  361 AVAMLYNMIL AENTNTGEAP VLPETEYAYN SDDRGYGAQG QPMSYTVKIP KDGQEEDVEI 420
  421 QRYYNPTSKL WQDYIADKMG QAMKNGGFDG WQGDTIGDNE VYSYADKDSN DPSKKFWLTE 480
  481 GYAEFLRAIK EKLPNYYLTV NDVNGEQIYR LKDGNQDVIY NEIWPFGPAL PSEMAAVKPN 540
  541 TVTSRPVLTK VRQGDWKISI VGAYMEGSEN GGSKADAEAG KSLQTDAVLL TSASIAAAGG 600
  601 YHMSLAALAN QQDETDGGQG IGVLQTAYYP TQSLKTSSEL TRKNNDYQQF ITAYENVLRD 660
  661 GVENDDAQVN TFDSNGQKLS TDAKGITGNQ VWTYGKKGDN FRTVQLLNLM GINSDWKNED 720
  721 GSAANKTPDE QTNLTVKYAL GDVSMEDAQR MANQTYVTSP DDWSKSNLQK VSASVKTDEN 780
  781 GKPVLVINVP KLTLWDVVYI SNANQESAPE ADQAQTPAAQ SSDDKVAENE TSQPAAEDAK 840
  841 EQTSEPAQDQ AAPAEQGQAI NQAESPATEP EAEVTPATAE PAKVDAPEAN QAADQAVSPE 900
  901 PASQEQAASQ SQPEANQTPA SNETPATQGN SEQPELNEPT AQTQPSSQVS PANTSVTPVA 960
  961 EQPTNQGQAA DKADQAPTNS TSTPESTSPV EPAATDQSSD TPIVTAGNLS VQPAETETPT1020
 1021 VPDKQGDSKA NQSSTETPVA DQVPAVAEQP QATEPNQAKP SVDKAAAPEA LSLIQLKQQT1080
 1081 PAIQAKEADD PEVDETKSEV TPDSGTDKAP EAGQVDSDKA PTVKPSTPEN NDNQPNNAND1140
 1141 ADKNKTNEAD SNKANQDSTK GSSADQSGKS TTPEDGPDNS SPEDPETKPS DPNTDTSDQE1200
 1201 QVKPSLPVVP NQTVDDPKTD DTDTPANTDS AKSKKVADAD KNKVATDSEG RQKSSEFPKE1260
 1261 ATDLEKVGQP ASPQVAGVKS SVATSPEKKS EPVSKTSTTS SSDKLPKTGD HKTVVLIIVL1320
 1321 GLVFVGMTGL LARHEKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle