YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCW1_ASHGO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAVTFTAAA VLSLLAASGR TLNLDVDDLQ SIREATSLLA TGLMDYYHGH DYGETVGKFS  60
   61 DPYYWWEAGG AWGSILDYWY YMENSTYNDL LTDSLLHQAG EDLSYTPWNE TTTEGNDDQF 120
  121 FWGMAVMDAA ERKNPNPPAD QPQRLALAQA VFNTMALRWD METCNGGLRW QIFRWNDGYH 180
  181 YKNSVSNGAL FHMAARLTRY TGNATYLEWA ERVYDWMYGV GLISIVQPNW HVVYDGTDIN 240
  241 DNCTNLNKLQ WTYNHGLIMA GCAFIYNHTQ DELWHQRTLR FLDSARIFLS NDTLYEAGCQ 300
  301 GGDNCNIDQR SFKAYFSRFL GLTAQLVPES RETIVRWIRA SAQGAAASCS GGRDGHTCGL 360
  361 NWLINGWDGK WGLGEQMAAL EIIQNLRCLE RPAPYTAMNG GTSPGDPAAG TKTKAENLPP 420
  421 LDIKAGDRAG AGIITALIGS SFLACTLWLI I

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	428	0.97
Transmembrane Helix	429	450	0.74
Cytoplasmic	451	451	0.73