YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCUA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.51
Transmembrane Helix	7	40	0.73
Non-Cytoplasmic	41	48	0.45
Transmembrane Helix	49	73	0.82
Cytoplasmic	74	85	0.48
Transmembrane Helix	86	110	0.75
Non-Cytoplasmic	111	163	0.54
Transmembrane Helix	164	186	0.87
Cytoplasmic	187	224	0.89
Transmembrane Helix	225	243	0.95
Non-Cytoplasmic	244	257	0.78
Transmembrane Helix	258	277	0.93
Cytoplasmic	278	287	0.81
Transmembrane Helix	288	307	0.93
Non-Cytoplasmic	308	327	0.87
Transmembrane Helix	328	349	0.88
Cytoplasmic	350	358	0.84
Transmembrane Helix	359	381	0.87
Non-Cytoplasmic	382	409	0.87
Transmembrane Helix	410	431	0.93
Cytoplasmic	432	433	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVVELIIVL LAIFLGARLG GIGIGFAGGL GVLVLAAIGV KPGNIPFDVI SIIMAVIAAI  60
   61 SAMQVAGGLD YLVHQTEKLL RRNPKYITIL APIVTYFLTI FAGTGNISLA TLPVIAEVAK 120
  121 EQGVKPCRPL STAVVSAQIA ITASPISAAV VYMSSVMEGH GISYLHLLSV VIPSTLLAVL 180
  181 VMSFLVTMLF NSKLSDDPIY RKRLEEGLVE LRGEKQIEIK SGAKTSVWLF LLGVVGVVIY 240
  241 AIINSPSMGL VEKPLMNTTN AILIIMLSVA TLTTVICKVD TDNILNSSTF KAGMSACICI 300
  301 LGVAWLGDTF VSNNIDWIKD TAGEVIQGHP WLLAVIFFFA SALLYSQAAT AKALMPMALA 360
  361 LNVSPLTAVA SFAAVSGLFI LPTYPTLVAA VQMDDTGTTR IGKFVFNHPF FIPGTLGVAL 420
  421 AVCFGFVLGS FML