YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCTA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSLFKSLY FQVLTAIAIG ILLGHFYPEI GEQMKPLGDG FVKLIKMIIA PVIFCTVVTG  60
   61 IAGMESMKAV GRTGAVALLY FEIVSTIALI IGLIIVNVVQ PGAGMNVDPA TLDAKAVAVY 120
  121 ADQAKDQGIV AFIMDVIPAS VIGAFASGNI LQVLLFAVLF GFALHRLGSK GQLIFNVIES 180
  181 FSQVIFGIIN MIMRLAPIGA FGAMAFTIGK YGVGTLVQLG QLIICFYITC ILFVVLVLGS 240
  241 IAKATGFSIF KFIRYIREEL LIVLGTSSSE SALPRMLDKM EKLGCRKSVV GLVIPTGYSF 300
  301 NLDGTSIYLT MAAVFIAQAT NSQMDIVHQI TLLIVLLLSS KGAAGVTGSG FIVLAATLSA 360
  361 VGHLPVAGLA LILGIDRFMS EARALTNLVG NGVATIVVAK WVKELDHKKL DDVLNNRAPD 420
  421 GKTHELSS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	27	0.97
Non-Cytoplasmic	28	43	0.89
Transmembrane Helix	44	64	0.92
Cytoplasmic	65	75	0.83
Transmembrane Helix	76	96	0.94
Non-Cytoplasmic	97	140	0.93
Transmembrane Helix	141	164	0.90
Cytoplasmic	165	183	0.81
Transmembrane Helix	184	206	0.82
Non-Cytoplasmic	207	222	0.71
Transmembrane Helix	223	242	0.94
Cytoplasmic	243	325	0.67
Transmembrane Helix	326	345	0.62
Non-Cytoplasmic	346	350	0.50
Transmembrane Helix	351	375	0.85
Cytoplasmic	376	428	0.77