YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213424268
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSSTTVPR SGVYYFSQGW KLVTLPGIRR FVILPLLVNI VLMGGAFWWL FTQLDAWIPS  60
   61 LMSHVPDWLQ WLSYLLWPIA VISVLLVFGY FFSTLANWIA APFNGLLAEQ LEARLTGATP 120
  121 PDTGILGIMK DVPRIMKREW QKLAWYLPRA IVLLVLYFIP GIGQTIAPVL WFLFSAWMLA 180
  181 IQYCDYPFDN HKVPFKTMRA ALRTQKVANM QFGALTSLFT MIPVLNLFIM PVAVCGATAM 240
  241 WVDCWRAKHA LWK

Type	Start	End	Confidence
Cytoplasmic	1	30	0.96
Transmembrane Helix	31	52	0.94
Non-Cytoplasmic	53	73	0.91
Transmembrane Helix	74	94	0.92
Cytoplasmic	95	144	0.95
Transmembrane Helix	145	168	0.87
Non-Cytoplasmic	169	218	0.86
Transmembrane Helix	219	242	0.88
Cytoplasmic	243	253	0.83