YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYSZ_ECOHS
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSFTSAPR SGFYYFAQGW KLVSQPGIRR FVILPLLVNI LLMGGAFWWL FTQLDVWIPT  60
   61 LMSYVPDWLQ WLSYLLWPLA VISVLLVFGY FFSTIANWIA APFNGLLAEQ LEARLTGATP 120
  121 PDTGIFGIMK DVPRIMKREW QKFAWYLPRA IVLLILYFIP GIGQTVAPVL WFLFSAWMLA 180
  181 IQYCDYPFDN HKVPFKEMRT ALRTRKITNM QFGALTSLFT MIPLLNLFIM PVAVCGATAM 240
  241 WVDCYRDKHA MWR

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	52	0.94
Non-Cytoplasmic	53	73	0.91
Transmembrane Helix	74	94	0.92
Cytoplasmic	95	144	0.95
Transmembrane Helix	145	171	0.82
Non-Cytoplasmic	172	218	0.82
Transmembrane Helix	219	242	0.87
Cytoplasmic	243	253	0.78