YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYST_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAVSSRRVL PGFTLSLGTS LLFVCLILLL PLSALVMQLA QMSWAQYWEV ITNPQVVAAY  60
   61 KVTLLSAFVA SIFNGVFGLL MAWILTRYRF PGRTLLDALM DLPFALPTAV AGLTLASLFS 120
  121 VNGFYGEWLA KFDIKVTYTW LGIAVAMAFT SIPFVVRTVQ PVLEELGPEY EEAAETLGAT 180
  181 RWQSFCKVVL PELSPALVAG VALSFTRSLG EFGAVIFIAG NIAWKTEVTS LMIFVRLQEF 240
  241 DYPAASAIAS VILAASLLLL FSINTLQSRF GRRVVGH

Type	Start	End	Confidence
Cytoplasmic	1	12	0.87
Transmembrane Helix	13	37	0.82
Non-Cytoplasmic	38	62	0.85
Transmembrane Helix	63	85	0.91
Cytoplasmic	86	101	0.81
Transmembrane Helix	102	121	0.90
Non-Cytoplasmic	122	135	0.82
Transmembrane Helix	136	156	0.92
Cytoplasmic	157	202	0.86
Transmembrane Helix	203	224	0.69
Non-Cytoplasmic	225	243	0.79
Transmembrane Helix	244	263	0.96
Cytoplasmic	264	277	0.83