YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYPR_CALVI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.38
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILKILILL ELIYTCVSGL SFTVTSKIYM DVKHQKKPLG RIVFGLFGKR APKTVTNFRH  60
   61 ICLRGINGTT YVGSEFHRVI SRFLIQGGDI VNNDGTGSTS IYGDFFQDEA LDVEHLRPGY 120
  121 LGMANRGPDT NGCQFYVTTV AAQWLNGKHT VFGKVIEGMD TVYAIEDVKT DTDDHPIDPV 180
  181 IIVNCGEMPT EPYEFYPDDF SILGWIKAAG LPFCSSFIVL MIFHYFFRQL NMYC

Type	Start	End	Confidence
Signal Peptide	1	19	0.41
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	203	0.61
Transmembrane Helix	204	227	0.85
Cytoplasmic	228	234	0.57