YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYOE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.83
Transmembrane Helix	12	30	0.95
Non-Cytoplasmic	31	37	0.83
Transmembrane Helix	38	60	0.94
Cytoplasmic	61	78	0.90
Transmembrane Helix	79	100	0.91
Non-Cytoplasmic	101	107	0.64
Transmembrane Helix	108	127	0.92
Cytoplasmic	128	132	0.89
Transmembrane Helix	133	154	0.91
Non-Cytoplasmic	155	161	0.79
Transmembrane Helix	162	183	0.90
Cytoplasmic	184	207	0.87
Transmembrane Helix	208	226	0.91
Non-Cytoplasmic	227	232	0.62
Transmembrane Helix	233	252	0.91
Cytoplasmic	253	263	0.82
Transmembrane Helix	264	285	0.91
Non-Cytoplasmic	286	296	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFKQYLQVT KPGIIFGNLI SVIGGFLLAS KGSIDYPLFI YTLVGVSLVV ASGCVFNNYI  60
   61 DRDIDRKMER TKNRVLVKGL ISPAVSLVYA TLLGIAGFML LWFGANPLAC WLGVMGFVVY 120
  121 VGVYSLYMKR HSVYGTLIGS LSGAAPPVIG YCAVTGEFDS GAAILLAIFS LWQMPHSYAI 180
  181 AIFRFKDYQA ANIPVLPVVK GISVAKNHIT LYIIAFAVAT LMLSLGGYAG YKYLVVAAAV 240
  241 SVWWLGMALR GYKVADDRIW ARKLFGFSII AITALSVMMS VDFMVPDSHT LLAAVW