YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYHR_CANMA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.98
Transmembrane Helix	101	121	0.90
Non-Cytoplasmic	122	136	0.85
Transmembrane Helix	137	157	0.93
Cytoplasmic	158	167	0.84
Transmembrane Helix	168	187	0.91
Non-Cytoplasmic	188	195	0.66
Transmembrane Helix	196	217	0.87
Cytoplasmic	218	227	0.68
Transmembrane Helix	228	251	0.87
Non-Cytoplasmic	252	263	0.88
Transmembrane Helix	264	283	0.95
Cytoplasmic	284	338	0.93
Transmembrane Helix	339	359	0.87
Non-Cytoplasmic	360	377	0.81
Transmembrane Helix	378	399	0.92
Cytoplasmic	400	416	0.89
Transmembrane Helix	417	438	0.94
Non-Cytoplasmic	439	445	0.85
Transmembrane Helix	446	468	0.91
Cytoplasmic	469	482	0.75
Transmembrane Helix	483	502	0.85
Non-Cytoplasmic	503	517	0.79
Transmembrane Helix	518	539	0.93
Cytoplasmic	540	552	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFIKDSFW GQIIYRLSGR KLFRHNDELP DYVVPEKYLL DPKEEVLNSS DKSQSSENKE  60
   61 QTEGDQATIQ NEPASEHIIV TWDGDDDPEN PYNWPFAWKA IAAMQIGFLT VSVYMASAIY 120
  121 TPGVEEIMNQ FNINSTLATL PLTMFVIGYG IGPLFWSPLS ENSRIGRTPL YIITLFIFFI 180
  181 LQIPTALSNH IAGLSVLRVI AGFFAAPALS TGGASYGDFI AMHYYSIALG VWSIFAVAGP 240
  241 SIGPLIGAAV INRSHDADGW RWSFWFMAIL SGVCFIVLSF SLPETYGKTL LRRKAERLRK 300
  301 LTGNNRIISE GELEDGHKTT SQVVSSLLWR PLEITMLEPV VFLIDIYIAL VYSIMYLIFE 360
  361 SVPIVYAGIH HFTLVEMGAT YVSTIIGIII GGAIYLPTVY YKFTKKLLAG QNVTPEVFLP 420
  421 PAIFGAICMP IGVFIFGWTS SPDINWFVPL IGMALFAVGA FIIFQTLFNY MAVSFKVEYL 480
  481 ASVFSSNAFF RSVSAGAFPL FGRALYNNLS IDKFPVGWGS SILGFISLGM IAIPVFFYLN 540
  541 GPKLRARSKY AY