YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41523
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	67	0.92
Transmembrane Helix	68	88	0.92
Cytoplasmic	89	95	0.80
Transmembrane Helix	96	116	0.93
Non-Cytoplasmic	117	122	0.77
Transmembrane Helix	123	143	0.94
Cytoplasmic	144	153	0.78
Transmembrane Helix	154	175	0.93
Non-Cytoplasmic	176	203	0.92
Transmembrane Helix	204	225	0.91
Cytoplasmic	226	274	0.96
Transmembrane Helix	275	293	0.96
Non-Cytoplasmic	294	308	0.89
Transmembrane Helix	309	330	0.91
Cytoplasmic	331	337	0.85
Transmembrane Helix	338	358	0.92
Non-Cytoplasmic	359	365	0.86
Transmembrane Helix	366	388	0.91
Cytoplasmic	389	401	0.82
Transmembrane Helix	402	422	0.93
Non-Cytoplasmic	423	429	0.72
Transmembrane Helix	430	452	0.90
Cytoplasmic	453	460	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCRRRRDP IADTIYSFSP FNRICVILFG AVSIHLTIGT YHTFGNMLPY MASYMRNFTD  60
   61 PSVRIEHMMW IPTFQGCFPF AMVIGGLTSS TFSPRVSAFI GCFLVTSSVA LSAYAIQHSF 120
  121 ALFFIVYGLL FGLGSGIAYV TAVSTAINWA PDKIGVISGI VAAGFGLSSS IFAPIQTMIV 180
  181 NPLNLPATKD GYFLQPELLH RVPALFTKLA VIYGIMQAMA LIVVCDPPFR KSRSTESILE 240
  241 EDDEDMDEDY ERPVFDNDED TTIQMTSSEM LKSPTFYCLF ASLFCCSFYA NMFYNLYKTY 300
  301 GESFIEDDMF MAMAFSIASV ANAIARIGWG YLTDRTSFQI ALSTATCLAS VFLLTMPMTR 360
  361 ELGKMAFLFW LVGTFICMGA THALFITATV KCFGNRHKAN NYGYLILSTT TSGILLAAIS 420
  421 QFYLKAIGYT YLFIITSIFP FCAFIFISCI QWTPQGKLVT