YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mt:Cyt-b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.82
Transmembrane Helix	34	56	0.90
Non-Cytoplasmic	57	81	0.79
Transmembrane Helix	82	100	0.91
Cytoplasmic	101	112	0.59
Transmembrane Helix	113	134	0.92
Non-Cytoplasmic	135	140	0.69
Transmembrane Helix	141	166	0.74
Cytoplasmic	167	178	0.71
Transmembrane Helix	179	201	0.93
Non-Cytoplasmic	202	229	0.77
Transmembrane Helix	230	251	0.90
Cytoplasmic	252	288	0.58
Transmembrane Helix	289	310	0.90
Non-Cytoplasmic	311	318	0.53
Transmembrane Helix	319	341	0.87
Cytoplasmic	342	347	0.54
Transmembrane Helix	348	370	0.84
Non-Cytoplasmic	371	378	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKPLRNSHP LFKIANNALV DLPAPINISS WWNFGSLLGL CLIIQILTGL FLAMHYTADI  60
   61 NLAFYSVNHI CRDVNYGWLL RTLHANGASF FFICIYLHVG RGIYYGSYKF TPTWLIGVII 120
  121 LFLVMGTAFM GYVLPWGQMS FWVATVITNL LYAIPYLGMD LVQWLWGGFA VDNATLTRFF 180
  181 TFHFILPFIV LAMTMIHLLF LHQTGSNNPI GLNSNIDKIP FHPYFTFKDI VGFIVMIFIL 240
  241 ISLVLISPNL LGDPDNFIPA TPLVTPAHIQ PEWYFLFAYA ILRSIPNKLG GVIALVLSIA 300
  301 ILMILPFYNL SKFRGIQFYP INQVMFWSML VTVILLTWIG ARPVEEPYVL IGQILTVVYF 360
  361 LYYLVNPLIT KWWDNLLN