YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.53
Transmembrane Helix	30	55	0.83
Cytoplasmic	56	76	0.55
Transmembrane Helix	77	99	0.83
Non-Cytoplasmic	100	111	0.58
Transmembrane Helix	112	135	0.87
Cytoplasmic	136	139	0.58
Transmembrane Helix	140	161	0.71
Non-Cytoplasmic	162	177	0.71
Transmembrane Helix	178	200	0.92
Cytoplasmic	201	228	0.77
Transmembrane Helix	229	250	0.88
Non-Cytoplasmic	251	287	0.80
Transmembrane Helix	288	309	0.90
Cytoplasmic	310	319	0.83
Transmembrane Helix	320	341	0.89
Non-Cytoplasmic	342	347	0.81
Transmembrane Helix	348	372	0.87
Cytoplasmic	373	380	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLRKTHPV LKIANDALVD LPTPLNISAW WNFGSLLGLC LITQILTGLF LAMHYTSDIS  60
   61 TAFSSVVHIC RDVNFGWLIR SIHANGASFF FICLYIHIAR GLYYGSYLYN ETWNIGVVLF 120
  121 LLVMMTAFVG YVLPWGQMSF WGATVITNLL SAVPYVGDTL VQWIWGGFSV DNATLTRFFA 180
  181 FHFLLPFIII AMVILHLLFL HETGSNNPLG LNPNMDKIPF HPYFSNKDLL GFVIMLFSLS 240
  241 LLALFSPNLL GDPENFTPAN PLVTPPHIKP EWYFLFAYAI LRSIPNKLGG VLALLFSILV 300
  301 LMVVPILHTS KQRGMAFRPV TQFLFWTLVA DMLVLTWIGG MPVEHPYIII GQMASILYFS 360
  361 LFLVLFPITG ILENKALQWS