YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|226721974, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALEKSLETG DGQEKVRKQT AVYVYEAPLR LWHWVTALSI VVLGVTGYFI GAPLPTMPGE  60
   61 AMDNYLMGYI RFAHFAAGYV LAIGFLGRVY WAFVGNHHAR ELFLVPVHRK AWWKELWHEV 120
  121 RWYLFLEKTP KKYIGHNPLG QLAMFCFFVV GAVFMSVTGF ALYAEGLGRD SWADRLFGWV 180
  181 IPLFGQSQDV HTWHHLGMWY LVVFVMVHVY LAVREDIVSR QSLISTMVGG WRMFKDDRPD 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	52	0.92
Non-Cytoplasmic	53	71	0.88
Transmembrane Helix	72	92	0.94
Cytoplasmic	93	141	0.94
Transmembrane Helix	142	163	0.93
Non-Cytoplasmic	164	191	0.95
Transmembrane Helix	192	212	0.93
Cytoplasmic	213	240	0.95