YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXB6_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWGALQTIL GGVNKHSTSI GKIWLTVLFI FRIMILVVAA ERVWGDEQDD FICNTLQPGC  60
   61 KNVCYDHFFP ISHIRLWALQ LIFVSTPALL VAMHVAYRRH EKKRQFRKGD QKCEYKDIEE 120
  121 IRTQRFRIEG TLWWTYTCSI FFRLVFEAVF MYAFYFMYDG FRMPRLMKCS AWPCPNTVDC 180
  181 FVSRPTEKTV FTIFMIAVSS ICILLNVAEL CYLLTKFFLR RSRKAGNQKH HPNHENKEET 240
  241 KQNEMNELIS DSCQNTVIGF TSS

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	75	0.96
Transmembrane Helix	76	97	0.95
Cytoplasmic	98	131	0.98
Transmembrane Helix	132	154	0.94
Non-Cytoplasmic	155	190	0.96
Transmembrane Helix	191	214	0.92
Cytoplasmic	215	263	0.98