YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXG1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSFLTRLL DEISNHSTFV GKIWLTLFII FRIVLTVVGG ESIYYDEQSK FVCNTQQPGC  60
   61 ENVCYDAFAP LSHVRFWVFQ IILITTPTIM YLGFAMHKIA RSNDVEYRPV NRKRMPMINR 120
  121 GRNRDYEEAE DNGEEDPMIM EEIVPEKEKA PEKSAVKHDG RRRIKRDGLM KVYILQLLSR 180
  181 IIFEVGFLFG QYILYGFEVA PSYVCTRSPC PHTVDCFVSR PTEKTIFLLI MYAVSCLCLS 240
  241 LTVLEILHLG LSGIRDAFRR RARHQSVQRP RAPICRQVPT APPGYHTALK KDKLSLGMKP 300
  301 EYNLDSGRES FGDESSSRDI DRLRRHLKLA QQHLDLAYQN GESSPSRSSS PESNGTAVEQ 360
  361 NRLNFAQEKQ GSKCEKGIHA

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	39	0.91
Non-Cytoplasmic	40	75	0.94
Transmembrane Helix	76	95	0.94
Cytoplasmic	96	171	0.97
Transmembrane Helix	172	194	0.90
Non-Cytoplasmic	195	227	0.96
Transmembrane Helix	228	251	0.93
Cytoplasmic	252	380	0.98