YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CVRA_VIBPA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.61
Transmembrane Helix	6	26	0.83
Cytoplasmic	27	29	0.58
Transmembrane Helix	30	51	0.68
Non-Cytoplasmic	52	57	0.74
Transmembrane Helix	58	78	0.90
Cytoplasmic	79	87	0.85
Transmembrane Helix	88	111	0.88
Non-Cytoplasmic	112	121	0.70
Transmembrane Helix	122	141	0.82
Cytoplasmic	142	163	0.76
Transmembrane Helix	164	187	0.82
Non-Cytoplasmic	188	191	0.53
Transmembrane Helix	192	214	0.76
Cytoplasmic	215	221	0.54
Transmembrane Helix	222	239	0.78
Non-Cytoplasmic	240	241	0.52
Transmembrane Helix	242	259	0.83
Cytoplasmic	260	270	0.73
Transmembrane Helix	271	292	0.85
Non-Cytoplasmic	293	298	0.65
Transmembrane Helix	299	324	0.80
Cytoplasmic	325	334	0.93
Transmembrane Helix	335	357	0.90
Non-Cytoplasmic	358	363	0.80
Transmembrane Helix	364	384	0.91
Cytoplasmic	385	581	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDADTINSFF LIGALLIALS VLLSPVSSKL GIPILLVFLA VGMLAGEDGL GGILFDNYSI  60
   61 AYLVSNLALA IILLDGGMRT RVASFRVALW PSVSLATIGV AITTLLTGLM ATWLFDLDLL 120
  121 QGILVGAIVG STDAAAVFSL LKGRSLNERV GSTLEIESGT NDPMAVFLTV TLIAILSSTG 180
  181 TGLSAGFLAL SFVKQFGIGA LLGFAGGWVL WKVINRNQLP DGLYSILTVS GGLIIFALSN 240
  241 SLGGSGILSI YLVGLLLGNR PTRSRHSILH VLDGMTWLAQ IGMFLVLGLL VTPSNLLSIA 300
  301 VPGLALAFGM ILFARPISVW IGLLPFKSFT PREKWFVSWV GLRGAVPIIL AVFPMMAGLP 360
  361 DAQLYFNLAF FVVMVSLIVQ GGTLTKAMSL AKVELPPKPE PISRTGVEIY PTSEWELFIY 420
  421 RLKADKWCIG EPLRSLSMPE GTRIAAVFRN QELLHPSGST RLEEDDTLCV LAQEKDLAAL 480
  481 SLLFSEAPEK ASLTRFFGDF FLDIEVKLAD VAMMYGLNLG YELQDKTLSN IVEEQLGSTP 540
  541 VLGDQFEWQG LQWVIADVVD HQVTKVGLRL PNEEEEGEEE D