YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229346016, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.60
Transmembrane Helix	6	26	0.83
Cytoplasmic	27	29	0.60
Transmembrane Helix	30	51	0.71
Non-Cytoplasmic	52	57	0.78
Transmembrane Helix	58	78	0.89
Cytoplasmic	79	87	0.83
Transmembrane Helix	88	111	0.88
Non-Cytoplasmic	112	118	0.67
Transmembrane Helix	119	141	0.77
Cytoplasmic	142	191	0.57
Transmembrane Helix	192	214	0.88
Non-Cytoplasmic	215	222	0.58
Transmembrane Helix	223	257	0.77
Cytoplasmic	258	268	0.76
Transmembrane Helix	269	292	0.83
Non-Cytoplasmic	293	298	0.81
Transmembrane Helix	299	323	0.85
Cytoplasmic	324	334	0.90
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	363	0.78
Transmembrane Helix	364	384	0.90
Cytoplasmic	385	581	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAVTINSFF MIGALLIGIS VLLSPVSSKL GIPILLVFLA VGMLAGEDGI GQIAFDNYPV  60
   61 AYLVSNLALA IILLDGGMRT RVASFRVAFW PSVSLATLGV AVTTLLTGLL AMWLFNLSLL 120
  121 QGVLVGAIVG STDAAAVFSL LKGRSLNERV GATLEIESGT NDPMAVFLTV TLIAVLGSAE 180
  181 TNLSAGFLLL SFIQQFGVGA LLGLAGGWIL WWLINRNQLP EGLYSILAVS GGLMIFALSN 240
  241 ALGGSGILSI YLTGLLLGNR PTRSRHAILN VLDGMTWLAQ IGMFLVLGLL VTPSELMEIA 300
  301 LPGLALAVGM ILFARPIAVW IGLAPFKSFT AREKWFVSWV GLRGAVPIIL AVFPMMAGLP 360
  361 NAQLYFNLAF FVVMVSLVVQ GGTLTKAMSL AKVELPPKPE PISRTGVEIY PTSEWELFIY 420
  421 KLKADKWCIG EPLRNLFMPE GTRIAAVFRD NQLLHPSGST ELCEGDTLCV MAQERDLESL 480
  481 SRLFSEAPEK ASLARFFGDF FLDIEAKLQD VALLYGLDLG ELEADAKLKD LVLEHLGETP 540
  541 VLGDYFEWHG LQWVVADVVD WKVTKIGLRL PPEEELQEGA E