YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAP2_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.62
Transmembrane Helix	6	24	0.79
Cytoplasmic	25	29	0.58
Transmembrane Helix	30	46	0.79
Non-Cytoplasmic	47	57	0.68
Transmembrane Helix	58	78	0.89
Cytoplasmic	79	88	0.82
Transmembrane Helix	89	112	0.89
Non-Cytoplasmic	113	119	0.74
Transmembrane Helix	120	141	0.90
Cytoplasmic	142	162	0.87
Transmembrane Helix	163	181	0.91
Non-Cytoplasmic	182	191	0.61
Transmembrane Helix	192	211	0.93
Cytoplasmic	212	219	0.75
Transmembrane Helix	220	238	0.87
Non-Cytoplasmic	239	241	0.81
Transmembrane Helix	242	259	0.88
Cytoplasmic	260	270	0.73
Transmembrane Helix	271	292	0.89
Non-Cytoplasmic	293	298	0.81
Transmembrane Helix	299	324	0.82
Cytoplasmic	325	334	0.94
Transmembrane Helix	335	357	0.88
Non-Cytoplasmic	358	364	0.72
Transmembrane Helix	365	388	0.85
Cytoplasmic	389	574	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDADSINSFF LIGALLTAVS VLLSPMSSRL GIPILLIFLA VGILAGEDGP GGILFDDYST  60
   61 AYLVSNFALA IILLDGGMRT RVASFRVALW PALSLATFGV AITTSITGVM AAWLFDLHWL 120
  121 QGLLVGAIVG STDAAAVFSL LKGRSLNERV GATLEIESGS NDPMAVFLTV TLIAILANVG 180
  181 AELSASFMLI SFIKQFGLGV LLGLGGGWLL WKLVNVSKLA EGLYSILVLS GGLMIYATSN 240
  241 KLGGSGILSI YLVGLFLGNK PTRGRHAILN VLDGMTWVSQ IGMFLVLGLL LTPSDLLDIW 300
  301 LPGLALAFGM ILFARPLAVW LSLLPFKSFG SRDRWFISWV GLRGAVPIIL AVFPMMAGLP 360
  361 GAQLYFNLAF FVVIVSLLVQ GASLTTAARL AKVELPPKPL PISRSGVEIY PKSEWEVFVY 420
  421 CLSESKWCIG EPLKRLAMPD GTRIAAVFRN NTLLHPSGST CLEAGDILCV LGQEKSLEAL 480
  481 SNLFSQAPET DEVSRFFGDF FIDTEVKLAD LAPIYGLTLD DETGAMTVAD LVALELGAHP 540
  541 VLGDQFLWQS LHWVVAGLYE GKVTNVGIRL PADA