YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CVRA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.82
Transmembrane Helix	6	26	0.87
Cytoplasmic	27	31	0.77
Transmembrane Helix	32	52	0.90
Non-Cytoplasmic	53	58	0.80
Transmembrane Helix	59	78	0.92
Cytoplasmic	79	88	0.82
Transmembrane Helix	89	114	0.84
Non-Cytoplasmic	115	121	0.80
Transmembrane Helix	122	143	0.91
Cytoplasmic	144	158	0.90
Transmembrane Helix	159	179	0.74
Non-Cytoplasmic	180	190	0.64
Transmembrane Helix	191	210	0.93
Cytoplasmic	211	217	0.66
Transmembrane Helix	218	238	0.82
Non-Cytoplasmic	239	242	0.54
Transmembrane Helix	243	261	0.83
Cytoplasmic	262	272	0.74
Transmembrane Helix	273	290	0.94
Non-Cytoplasmic	291	297	0.72
Transmembrane Helix	298	323	0.79
Cytoplasmic	324	333	0.88
Transmembrane Helix	334	356	0.89
Non-Cytoplasmic	357	362	0.81
Transmembrane Helix	363	383	0.91
Cytoplasmic	384	578	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATTIISLF ILGSILVTSS ILLSSFSSRL GIPILVIFLA IGMLAGVDGV GGIPFDNYPF  60
   61 AYMVSNLALA IILLDGGMRT QASSFRVALG PALSLATLGV LITSGLTGMM AAWLFNLDLI 120
  121 EGLLIGAIVG STDAAAVFSL LGGKGLNERV GSTLEIESGS NDPMAVFLTI TLIAMIQHHE 180
  181 SNISWMFIVD ILQQFGLGIV IGLGGGYLLL QMINRIALPA GLYPLLALSG GILIFSLTTA 240
  241 LEGSGILAVY LCGFLLGNRP IRNRYGILQN FDGLAWLAQI AMFLVLGLLV NPSDLLPIAI 300
  301 PALILSAWMI FFARPLSVFA GLLPFRGFNL RERVFISWVG LRGAVPIILA VFPMMAGLEN 360
  361 ARLFFNVAFF VVLVSLLLQG TSLSWAAKKA KVVVPPVGRP VSRVGLDIHP ENPWEQFVYQ 420
  421 LSADKWCVGA ALRDLHMPKE TRIAALFRDN QLLHPTGSTR LREGDVLCVI GRERDLPALG 480
  481 KLFSQSPPVA LDQRFFGDFI LEASAKYADV ALIYGLEDGR EYRDKQQTLG EIVQQLLGAA 540
  541 PVVGDQVEFA GMIWTVAEKE DNEVLKIGVR VAEEEAES