YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CUSA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.80
Transmembrane Helix	10	32	0.73
Non-Cytoplasmic	33	339	0.91
Transmembrane Helix	340	358	0.79
Cytoplasmic	359	363	0.66
Transmembrane Helix	364	383	0.92
Non-Cytoplasmic	384	389	0.68
Transmembrane Helix	390	411	0.89
Cytoplasmic	412	443	0.87
Transmembrane Helix	444	467	0.87
Non-Cytoplasmic	468	483	0.85
Transmembrane Helix	484	505	0.93
Cytoplasmic	506	532	0.87
Transmembrane Helix	533	554	0.81
Non-Cytoplasmic	555	871	0.93
Transmembrane Helix	872	891	0.92
Cytoplasmic	892	897	0.87
Transmembrane Helix	898	917	0.95
Non-Cytoplasmic	918	925	0.71
Transmembrane Helix	926	948	0.90
Cytoplasmic	949	984	0.96
Transmembrane Helix	985	1004	0.93
Non-Cytoplasmic	1005	1011	0.83
Transmembrane Helix	1012	1039	0.80
Cytoplasmic	1040	1047	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEWIIRRSV ANRFLVLMGA LFLSIWGTWT IINTPVDALP DLSDVQVIIK TSYPGQAPQI  60
   61 VENQVTYPLT TTMLSVPGAK TVRGFSQFGD SYVYVIFEDG TDPYWARSRV LEYLNQVQGK 120
  121 LPAGVSAELG PDATGVGWIY EYALVDRSGK HDLADLRSLQ DWFLKYELKT IPDVAEVASV 180
  181 GGVVKEYQVV IDPQRLAQYG ISLAEVKSAL DASNQEAGGS SIELAEAEYM VRASGYLQTL 240
  241 DDFNHIVLKA SENGVPVYLR DVAKVQIGPE MRRGIAELNG EGEVAGGVVI LRSGKNAREV 300
  301 IAAVKDKLET LKSSLPEGVE IVTTYDRSQL IDRAIDNLSG KLLEEFIVVA VVCALFLWHV 360
  361 RSALVAIISL PLGLCIAFIV MHFQGLNANI MSLGGIAIAV GAMVDAAIVM IENAHKRLEE 420
  421 WQHQHPDATL DNKTRWQVIT DASVEVGPAL FISLLIITLS FIPIFTLEGQ EGRLFGPLAF 480
  481 TKTYAMAGAA LLAIVVIPIL MGYWIRGKIP PESSNPLNRF LIRVYHPLLL KVLHWPKTTL 540
  541 LVAALSVLTV LWPLNKVGGE FLPQINEGDL LYMPSTLPGI SAAEAASMLQ KTDKLIMSVP 600
  601 EVARVFGKTG KAETATDSAP LEMVETTIQL KPQEQWRPGM TMDKIIEELD NTVRLPGLAN 660
  661 LWVPPIRNRI DMLSTGIKSP IGIKVSGTVL ADIDAMAEQI EEVARTVPGV ASALAERLEG 720
  721 GRYINVEINR EKAARYGMTV ADVQLFVTSA VGGAMVGETV EGIARYPINL RYPQSWRDSP 780
  781 QALRQLPILT PMKQQITLAD VADIKVSTGP SMLKTENARP TSWIYIDARD RDMVSVVHDL 840
  841 QKAIAEKVQL KPGTSVAFSG QFELLERANH KLKLMVPMTL MIIFVLLYLA FRRVGEALLI 900
  901 ISSVPFALVG GIWLLWWMGF HLSVATGTGF IALAGVAAEF GVVMLMYLRH AIEAVPSLNN 960
  961 PQTFSEQKLD EALYHGAVLR VRPKAMTVAV IIAGLLPILW GTGAGSEVMS RIAAPMIGGM1020
 1021 ITAPLLSLFI IPAAYKLMWL HRHRVRK