YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSIE_ECOLI
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPTLAPPSV LSAPQRRCQI LLTLFQPGLT ATMATFSELN GVDDDIASLD ISETGREILR  60
   61 YHQLTLTTGY DGSYRVEGTV LNQRLCLFHW LRRGFRLCPS FITSQFTPAL KSELKRRGIA 120
  121 RNFYDDTNLQ ALVNLCSRRL QKRFESRDIH FLCLYLQYCL LQHHAGITPQ FNPLQRRWAE 180
  181 SCLEFQVAQE IGRHWQRRAL QPVPPDEPLF MALLFSMLRV PDPLRDAHQR DRQLRQSIKR 240
  241 LVNHFRELGN VRFYDEQGLC DQLYTHLAQA LNRSLFAIGI DNTLPEEFAR LYPRLVRTTR 300
  301 AALAGFESEY GVHLSDEESG LVAVIFGAWL MQENDLHEKQ IILLTGNDSE REAQIEQQLR 360
  361 ELTLLPLNIK HMSVKAFLQT GAPRGAALII APYTMPLPLF SPPLIYTDLT LTTHQQEQIR 420
  421 KMLESA

Type	Start	End	Confidence
Signal Peptide	1	34	0.78
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	426	0.98