YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156230842, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKPPNSTS LFLSEDSEKP QRADEGLHRL CRVLQKQMSG SRRKMGGITR NSVKTFLRRN  60
   61 AFVIFTVAAV ALGVALGFAL RPHNLSIRQV KYFSFPGELL MRMLQMLVLP LIISSLVTGI 120
  121 SSLDSKASGK MGIRAIVYYM VTTLIAVFIG IVMVIIIKPG KGSRDSPVAS SGSIEPVQAA 180
  181 DAFLDLIRNM FPPNLVEACF KQYKTLYKKT VLTKNVTIVV NATENVNSTD LSQVSNFSTV 240
  241 LQTIQETVEE AVPVSGSSNG VNALGLVVFS MCFGLVIGNM KQQGQALRDF FDCLNEAIMR 300
  301 LVAIIIWYAP VGILFLIAGK IVEMKDLAQV GGQLGMYTVS VIVGLLIHGL LVLPLLFFVV 360
  361 TKKNPFTFIA GLLQALITAL GTSSSSATLP ITFRCLEENN QVDKRVTRFV LPVGATINMD 420
  421 GTALYEAVAA IFIAQVNDMD LNFGQILTIS ITATAASIGA AGIPQAGLVT MVIVLTSVGL 480
  481 PTEDITLIIA VDWFLDRLRT TTNVLGDSFG AGIVEHLSRQ ELQNQDVEIS NSVIEENEKP 540
  541 YQLICQENDS LKHRNSETTM

Type	Start	End	Confidence
Cytoplasmic	1	59	0.95
Transmembrane Helix	60	80	0.94
Non-Cytoplasmic	81	100	0.89
Transmembrane Helix	101	123	0.89
Cytoplasmic	124	134	0.90
Transmembrane Helix	135	157	0.94
Non-Cytoplasmic	158	259	0.95
Transmembrane Helix	260	280	0.90
Cytoplasmic	281	297	0.90
Transmembrane Helix	298	319	0.91
Non-Cytoplasmic	320	335	0.83
Transmembrane Helix	336	359	0.90
Cytoplasmic	360	365	0.81
Transmembrane Helix	366	389	0.74
Non-Cytoplasmic	390	445	0.64
Transmembrane Helix	446	480	0.60
Cytoplasmic	481	560	0.61