YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157841215, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.96
Transmembrane Helix	82	106	0.87
Non-Cytoplasmic	107	114	0.78
Transmembrane Helix	115	132	0.94
Cytoplasmic	133	154	0.81
Transmembrane Helix	155	173	0.64
Non-Cytoplasmic	174	180	0.46
Transmembrane Helix	181	201	0.89
Cytoplasmic	202	215	0.49
Transmembrane Helix	216	237	0.86
Non-Cytoplasmic	238	247	0.50
Transmembrane Helix	248	269	0.91
Cytoplasmic	270	279	0.54
Transmembrane Helix	280	304	0.87
Non-Cytoplasmic	305	314	0.50
Transmembrane Helix	315	336	0.65
Cytoplasmic	337	343	0.59
Transmembrane Helix	344	363	0.46
Non-Cytoplasmic	364	369	0.65
Transmembrane Helix	370	389	0.65
Cytoplasmic	390	415	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLAVAHGR RGGARERGRG VDSSCWFAPG VLRRLFELPA PVLSRHQLKR LEEHRYSSSG  60
   61 RSLLEPIMQQ YWEWLVNRMP PWIAPNLITI VGLVTNIFTT LVLVYYCPTA TEQAPLWAYL 120
  121 LCAVGLFVYQ SLDAIDGKQA RRTNSSSPLG ELFDHGCDSL STVFVVLGTS IAVQLGTHPD 180
  181 WMFFCCFAGM FMFYCAHWQT YVSGTLRFGI IDVTEVQIFI ILVYLLAAVG GSAFWQSPIP 240
  241 VINIQMKIIP ALCTFIGVVF SCTNYFRVIF TGGVGKNGST IAGTSVLSPV LHIGSVIILA 300
  301 MMIYKKSAVQ LFQKHPCLYI LAFGFVSAKI TNKLVVAHMT KSEMHLHDVA FLGPGLLFLD 360
  361 QYFNSFIDEY LVLWISLILS LFDLVRYCVS VCNEIASHLH ICVFKIKPQS AAGIQ