YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156230274
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNESLDLNIT LVDDGNWTFI NGSSEFFLPL NNITYVGYYL HQPSVAAVFI VSYLLIFLVC  60
   61 MIGNGVVCFI VLRSKNMRTV TNLFILNLAI SDLLVGIFCM PTTLLDNIIT GWPFGSMVCK 120
  121 MSGMVQGISV SASVFTLVAI AVDRVRCIVY PFKQKLTIST ATFIIVIIWV LAVSIMCPSG 180
  181 VMLQVTKEQN IRVFRGNNRS SPFYWCRENW PNQEMRKIYT TVLFANIYLA PLSLIVIMYA 240
  241 RIGITLFKTA MPAGGKHGHD NRHSVSKKKQ RVIKMLLIVA LLFILSWLPL WTLMMLTDYV 300
  301 KLTEHQYRVI NIYIYPFAHW LAFFNSSVNP IIYGFFNENF RRGFQAIFKF GLCPVGGQHR 360
  361 TYSHRVQGNS VQPVNLQPST EPISLNSLEN NSSRRMNHIN EQDLVMEDLE KVSEYSMEGA 420
  421 SL

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.71
Transmembrane Helix	49	72	0.92
Cytoplasmic	73	82	0.88
Transmembrane Helix	83	105	0.92
Non-Cytoplasmic	106	122	0.88
Transmembrane Helix	123	142	0.93
Cytoplasmic	143	155	0.84
Transmembrane Helix	156	177	0.86
Non-Cytoplasmic	178	221	0.91
Transmembrane Helix	222	243	0.84
Cytoplasmic	244	271	0.91
Transmembrane Helix	272	293	0.91
Non-Cytoplasmic	294	315	0.89
Transmembrane Helix	316	336	0.91
Cytoplasmic	337	422	0.95