YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156229614
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WAVWKMISSQ KTKLLNCFAR NFYNMRLLAL FLAFAINFIL LFYKVSSTTD DVEIAFHDES  60
   61 TKSSQEVYFE LEENSGYMKM ILHCLAVLHT LISLCCIIGY YCLKVPLVIF KREKELARKL 120
  121 EFDGLYITEQ PSEDDIKGQW DRMVINTPSY PSNYWDKFVK RKVMAKYGEL YGSARVSELL 180
  181 GLDKAALDFS SGAQERKRPM QKGILVRLNT TDVKYHIWKL GVVFTDNSFL YLAWYMFVSV 240
  241 LGHYNNFFFA AHLLDIAMGF KTLRTILSSV THNGKQLVLT VGLLAVVVYL YTVVAFNFFR 300
  301 KFYNKSEDGE PMDMKCDDML TCYMFHMYVG VRAGGGIGDE IEDPAGDEFE FYRIIFDITF 360
  361 FFFVIVILLA IIQGLIIDAF GELRDQQEQV KEDMETKCFI CGIGNEYFDT VPHGFESHTL 420
  421 QEHNLA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.90
Non-Cytoplasmic	43	84	0.91
Transmembrane Helix	85	103	0.96
Cytoplasmic	104	216	0.98
Transmembrane Helix	217	238	0.72
Non-Cytoplasmic	239	247	0.49
Transmembrane Helix	248	265	0.47
Cytoplasmic	266	276	0.36
Transmembrane Helix	277	299	0.88
Non-Cytoplasmic	300	353	0.48
Transmembrane Helix	354	377	0.86
Cytoplasmic	378	426	0.58