YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25453430
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCCKCCGETQ RKVWVFGLGS VFLLLGILIV VFWPGIADNL VEDGLTLKPG TDAYESWLEA  60
   61 PIPIYLSFYM FNWTNPEDIR NPDIKPNFVE MGPYTFLEKH KKENYTFYDN ATVAYYERRT 120
  121 WFFDPERSNG TLDDMVTAAH AITATVADEM RDQRKIVKKI INFMLNHEGG KLYVTKPVGE 180
  181 WIFEGYQDNI TDFLNLFNTT KIDIPYKRFG WLADRNESLT YDGLFTIHTG TDDISNLGRL 240
  241 THWNGKSETG FYEMPCGIVN GTTGDMFPPK MNVNDEITIF ATDACRFMNL RPRGTYENHG 300
  301 LTATKWVGTE ETLDSGENYP NQACFCDEAR FDECPKTGVV ECKACRDKAP IYSSFPHFYL 360
  361 ADQSYVDAVS GMKPEKEKHE FFLAVEPITG VPVQVHGRIQ INMMIEPDDD FDIYRGVQKV 420
  421 LMPMFWFDQY AELSSELASK PSWPLICPVT ESYSAIP

Type	Start	End	Confidence
Cytoplasmic	1	12	0.95
Transmembrane Helix	13	37	0.88
Non-Cytoplasmic	38	457	0.95