YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CPXA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGSLTARIF AIFWLTLALV LMLVLMLPKL DSRQMTELLD SEQRQGLMIE QHVEAELAND  60
   61 PPNDLMWWRR LFRAIDKWAP PGQRLLLVTT EGRVIGAERS EMQIIRNFIG QADNADHPQK 120
  121 KKYGRVELVG PFSVRDGEDN YQLYLIRPAS SSQSDFINLL FDRPLLLLIV TMLVSTPLLL 180
  181 WLAWSLAKPA RKLKNAADEV AQGNLRQHPE LEAGPQEFLA AGASFNQMVT ALERMMTSQQ 240
  241 RLLSDISHEL RTPLTRLQLG TALLRRRSGE SKELERIETE AQRLDSMIND LLVMSRNQQK 300
  301 NALVSETIKA NQLWSEVLDN AAFEAEQMGK SLTVNFPPGP WPLYGNPNAL ESALENIVRN 360
  361 ALRYSHTKIE VGFAVDKDGI TITVDDDGPG VSPEDREQIF RPFYRTDEAR DRESGGTGLG 420
  421 LAIVETAIQQ HRGWVKAEDS PLGGLRLVIW LPLYKRS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.41
Transmembrane Helix	9	28	0.64
Non-Cytoplasmic	29	163	0.75
Transmembrane Helix	164	184	0.88
Cytoplasmic	185	457	0.69