YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPT_SPIOL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRVLSRTT AIAALPKLFR PSREAASFGF ATGVKTPVGL VKDGGSLTWG RQLRPVLLLE  60
   61 PVQTGPVCSR REKTAVQPCR AASGSSGEAK TGFLEKYPAL VTGSFFFMWY FLNVIFNILN 120
  121 KKIYNYFPYP YFVSVIHLFV GVVYCLASWS VGLPKRAPMD SKLLKLLIPV AVCHAIGHVT 180
  181 SNVSFAAVAV SFTHTIKALE PFFNAAASQF VLGQSIPITL WLSLAPVVIG VSMASLTELS 240
  241 FNWLGFISAM ISNVSFTYRS LYSKKAMTDM DSTNIYAYIS IIALFVCLPP AIIVEGPQLM 300
  301 KHGFNDAIAK VGLTKFISDL FWVGMFYHLY NQLATNTLER VAPLTHAVGN VLKRVFVIGF 360
  361 SIIAFGNKIS TQTAIGTSIA IAGVALYSLI KAKMEEEKRQ MKST

Type	Start	End	Confidence
Cytoplasmic	1	96	0.93
Transmembrane Helix	97	119	0.83
Non-Cytoplasmic	120	130	0.80
Transmembrane Helix	131	153	0.88
Cytoplasmic	154	165	0.83
Transmembrane Helix	166	190	0.71
Non-Cytoplasmic	191	209	0.62
Transmembrane Helix	210	234	0.72
Cytoplasmic	235	238	0.48
Transmembrane Helix	239	262	0.75
Non-Cytoplasmic	263	274	0.50
Transmembrane Helix	275	294	0.96
Cytoplasmic	295	310	0.44
Transmembrane Helix	311	330	0.69
Non-Cytoplasmic	331	368	0.58
Transmembrane Helix	369	390	0.87
Cytoplasmic	391	404	0.92