YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPT_SOLTU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRVLTGGA TAIRGGLPLL RKPAAVMKFT TAAHAISRDF PAGAVTAKPV GPLIAGPNLI  60
   61 WGRQLRPAIL LETSPKRESI KPCSAAASSS AGSSDSSGDA KVGFFNKATL TTGFFFFMWY 120
  121 FLNVIFNILN KKIYNYFPYP YFVSVIHLAV GVVYCLVSWG VGLPKRAPID STQLKLLTPV 180
  181 AFCHALGHVT SNVSFAAVRV SFTHTVKALE PFFNAAASQF ILGQQIPLAL WLSLAPVVLG 240
  241 VSMASLTELS FNWLGFTSAM ISNISFTYRS IYSKKAMTDM DSTNVYAYIS IIALIFCLPP 300
  301 AIFIEGPQLL QHGFNDAIAK VGLTKFVTDL FWVGMFYHLY NQVATNTLER VAPLTHAVGN 360
  361 VLKRVFVIGF SIVIFGNKIS TQTGIGTCIA IAGVAIYSFI KAKMEEEKRQ KKAA

Type	Start	End	Confidence
Cytoplasmic	1	103	0.90
Transmembrane Helix	104	129	0.76
Non-Cytoplasmic	130	140	0.77
Transmembrane Helix	141	163	0.88
Cytoplasmic	164	225	0.66
Transmembrane Helix	226	246	0.78
Non-Cytoplasmic	247	252	0.52
Transmembrane Helix	253	272	0.79
Cytoplasmic	273	283	0.82
Transmembrane Helix	284	304	0.94
Non-Cytoplasmic	305	378	0.57
Transmembrane Helix	379	400	0.89
Cytoplasmic	401	414	0.92