YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPT_PEA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRVLSRAT TLSSLPTLNK LHRLPLANAS LPSVKSFGSV SDGGNLVWGR QLRPELCSPV  60
   61 LKKGASLLRP CPATAGGNDS AGEEKVAPVG FFSRYPALTT GFFFFTWYFL NVIFNILNKK 120
  121 IYNYFPYPYF VSVIHLAVGV VYCLVSWTVG LPKRAPIDGN LLKLLIPVAV CHALGHVTSN 180
  181 VSFAAVAVSF THTVKALEPF FNAAASQFIL GQSIPITLWL SLAPVVIGVS MASLTELSFN 240
  241 WLGFISAMIS NISFTYRSIY SKKAMTDMDS TNIYAYISII ALIVCIPPAL IIEGPTLLKT 300
  301 GFNDAIAKVG LVKFVSDLFW VGMFYHLYNQ VATNTLERVA PLTHAVGNVL KRVFVIGFSI 360
  361 IIFGNKISTQ TGIGTGIAIA GVALYSFIKA QIEEEKRQAK AA

Type	Start	End	Confidence
Cytoplasmic	1	94	0.80
Transmembrane Helix	95	117	0.81
Non-Cytoplasmic	118	128	0.69
Transmembrane Helix	129	151	0.89
Cytoplasmic	152	163	0.67
Transmembrane Helix	164	191	0.64
Non-Cytoplasmic	192	207	0.49
Transmembrane Helix	208	232	0.75
Cytoplasmic	233	236	0.39
Transmembrane Helix	237	260	0.78
Non-Cytoplasmic	261	271	0.41
Transmembrane Helix	272	292	0.93
Cytoplasmic	293	308	0.33
Transmembrane Helix	309	328	0.71
Non-Cytoplasmic	329	368	0.48
Transmembrane Helix	369	388	0.88
Cytoplasmic	389	402	0.86