YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPT1_BRAOB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.75
Transmembrane Helix	100	122	0.85
Non-Cytoplasmic	123	131	0.64
Transmembrane Helix	132	156	0.84
Cytoplasmic	157	168	0.62
Transmembrane Helix	169	183	0.60
Non-Cytoplasmic	184	184	0.09
Transmembrane Helix	185	199	0.56
Cytoplasmic	200	213	0.46
Transmembrane Helix	214	239	0.74
Non-Cytoplasmic	240	243	0.47
Transmembrane Helix	244	265	0.82
Cytoplasmic	266	276	0.64
Transmembrane Helix	277	297	0.93
Non-Cytoplasmic	298	313	0.62
Transmembrane Helix	314	333	0.66
Cytoplasmic	334	352	0.41
Transmembrane Helix	353	368	0.51
Non-Cytoplasmic	369	371	0.71
Transmembrane Helix	372	393	0.83
Cytoplasmic	394	407	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRVLLRAT ETVTGVPQLR RPIRAINRQF STASSSFTAF AKPIGSIGEG GNLISGRQLR  60
   61 PLLLLDSLPE KREILKPVRA ASAEGGDSAG ETKVGFLGKY PWLVTGILLL MWYFLNVIFN 120
  121 ILNKKIYNYF PYPYFVSVIH LFVGVVYCLV SWSVGLPKRA PVNSDILKVL IPVAVCHAIG 180
  181 HVTSNVSFAA VAVSFTHTIK ALEPFFNASA SQFLLGQPIP ITLWLSLAPV VLGVAMASLT 240
  241 ELSFNWLGFI SAMISNISFT YRSIFSKKAM TDMDSTNVYA YISIIALFVC LPPAIIVEGP 300
  301 QLLKHGFNDA IAKVGMTKFI SDLFWVGMFY HLYNQLATNT LERVAPLTHA VGNVLKRVFV 360
  361 IGFSIVIFGN KISTQTGIGT GIAIAGVALY SVIKAKIEEE KRQGKTA