YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CPDP_ALIFS
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKNKLAVLF TCLSVFSFSA QSGSFDTVTL GSKGGIQDGN LTAFLIKSEA DSNFVMLDAG  60
   61 SVVNGLIVSE QKGAFKDITV PDSSPYTKVG YLLKDRIKGY FISHAHLDHV AGLIISSPDD 120
  121 SKKPIYGLAA TNKDLMKNYF NWSAWPNFGN KGEGFKLNKY NYVDLQPGVW SPVAETTMSV 180
  181 VSLPLSHSGG QSTVFILKDS EGDVFAYFGD TGPDEVEKSS AMRTAWSVLA PFVKQGKLKG 240
  241 IIIEVSFTNE TPDKSLFGHL TPNWLVKELS VLEDMNGKGS LKDLNVAISH IKYSLKNSED 300
  301 PKVIIKKQLV EVNDLGVNFI FPEQGDSLQF

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	330	0.99