YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXT_SOYBN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILCPLEAFIV QHILTISVMG LLSCFRSTVL RKCSKGSSGM SRFLYTNNFQ RNLISSGGNE  60
   61 SYYGYFNRRS YTSLYMGTGT VGGITSARIR VPNVGCEGFM CSSHLSITQR NSRLIHSTSK 120
  121 IVPNSEIQNI TTEMVKTPEV SRWMDQVIPT IAPCDAAEPW QLGFQDAATP IMQGIIDLHH 180
  181 DIFFFVIQIG VFVSWVLLRA LWHFRSKMNP IPQRIVHGTT IEILWTIFPS VILMFIAIPS 240
  241 FALLYSMDDI VVDPAITIKA IGHQWYWTYE YSDYNNSDEQ SLAFDSYMIP EDDLELGQLR 300
  301 LLEVDNRVVV PAKTHLRVII TSADVLHSWA VPSLGVKCDA VPGRLNQIST FIQREGVYYG 360
  361 QCSEICGTNH AFMPIVIEAV STKDYGSWVS SQVN

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.83
Transmembrane Helix	8	30	0.74
Cytoplasmic	31	73	0.82
Transmembrane Helix	74	90	0.34
Non-Cytoplasmic	91	181	0.52
Transmembrane Helix	182	202	0.94
Cytoplasmic	203	222	0.51
Transmembrane Helix	223	245	0.86
Non-Cytoplasmic	246	394	0.58