YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mt:CoIII-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHSNHPFH LVDYSPWPLT GAIGAMTTVS GMVKWFHQYD ISLFVLGNII TILTVYQWWR  60
   61 DVSREGTYQG LHTYAVTIGL RWGMILFILS EVLFFVSFFW AFFHSSLSPA IELGASWPPM 120
  121 GIISFNPFQI PLLNTAILLA SGVTVTWAHH SLMENNHSQT TQGLFFTVLL GIYFTILQAY 180
  181 EYIEAPFTIA DSIYGSTFFM ATGFHGIHVL IGTTFLLVCL LRHLNNHFSK NHHFGFEAAA 240
  241 WYWHFVDVVW LFLYITIYWW GG

Type	Start	End	Confidence
Cytoplasmic	1	13	0.73
Transmembrane Helix	14	33	0.81
Non-Cytoplasmic	34	40	0.64
Transmembrane Helix	41	59	0.92
Cytoplasmic	60	79	0.87
Transmembrane Helix	80	103	0.89
Non-Cytoplasmic	104	126	0.89
Transmembrane Helix	127	149	0.89
Cytoplasmic	150	160	0.83
Transmembrane Helix	161	180	0.91
Non-Cytoplasmic	181	200	0.86
Transmembrane Helix	201	221	0.91
Cytoplasmic	222	239	0.86
Transmembrane Helix	240	260	0.93
Non-Cytoplasmic	261	262	0.85