YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHQAHAYHM VDPSPWPLTG AVAALLMSSG LAIWFHLHSM TLIVLGMILL ILTMIQWWRD  60
   61 IIREGTFQGH HTPPVQKGLR YGMILFITSE VFFFLGFFWA FYHSSLAPTP ELGGCWPPTG 120
  121 LTTLDPFEVP LLNTAVLLAS GVTVTWAHHS LMEGERKQAI QSLALTILLG LYFTALQAME 180
  181 YYEAPFTIAD GVYGSTFFVA TGFHGLHVII GSTFLAVCLL RQVLFHFTSD HHFGFEAAAW 240
  241 YWHFVDVVWL FLYVSIYWWG S

Type	Start	End	Confidence
Cytoplasmic	1	15	0.84
Transmembrane Helix	16	35	0.90
Non-Cytoplasmic	36	40	0.66
Transmembrane Helix	41	58	0.96
Cytoplasmic	59	78	0.91
Transmembrane Helix	79	102	0.90
Non-Cytoplasmic	103	128	0.93
Transmembrane Helix	129	149	0.92
Cytoplasmic	150	158	0.88
Transmembrane Helix	159	179	0.90
Non-Cytoplasmic	180	202	0.83
Transmembrane Helix	203	225	0.85
Cytoplasmic	226	238	0.91
Transmembrane Helix	239	259	0.93
Non-Cytoplasmic	260	261	0.83