YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX2_VIGUN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STVVGKCCKG NFGMSRFLLS NDFQRKLIVS GKESYYDHFS KRSYSSPSKA PGTESTITST  60
   61 KIKMPNIGSE GFAFSSFLST VNKNSRMINF SSCLKTPVKP EQIAANPVIL KMTTELEKIP 120
  121 RALRWMCGGF PAIALCDAPE PWQLGFQDAA TPIMQGIMDL HHDIFFFLVQ ILVFVLWVLS 180
  181 RALWCFRSKI SPIPQRIVHG TTIEILWTIL PSIILMFIAI PSFTLLYSMD DVVVDPAITI 240
  241 KAIGHQWYWS YEYSDYNNSD EQSLAFDSYM VPEDDLELGQ LRLLEVDNRV VVPAKTHLRV 300
  301 LITSADVLHS WAVPSLGVKC DAVPGRLNQI STFIQREGVY YGQCSEICGT NHAFMPIVVE 360
  361 AVSTKDYGSW VSNQIQ

Type	Start	End	Confidence
Cytoplasmic	1	121	0.96
Transmembrane Helix	122	141	0.86
Non-Cytoplasmic	142	163	0.87
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	204	0.79
Transmembrane Helix	205	220	0.96
Non-Cytoplasmic	221	376	0.94